Deep Dye Drop gating
stable
  • License and funding
  • Installation
  • Getting started
  • Run cell cycle gating (automated)
  • Manual gating
  • Cell cycle phases (based on DNA and EdU staining)
  • Dead cell filter (based on DNA and LDR staining)
  • pH3 filter
  • Peak identification
  • Plotting functions
Deep Dye Drop gating
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Index

C | E | F | G | P

C

  • cell_cycle_gating.findpeaks (module)
  • cell_cycle_gating.ph3_filter (module)
  • compute_log_ph3() (in module cell_cycle_gating.ph3_filter)

E

  • evaluate_Mphase() (in module cell_cycle_gating.ph3_filter)

F

  • findpeaks() (in module cell_cycle_gating.findpeaks)

G

  • get_ph3_gates() (in module cell_cycle_gating.ph3_filter)
  • get_prominence_reference_level() (in module cell_cycle_gating.findpeaks)
  • get_width_half_prominence() (in module cell_cycle_gating.findpeaks)

P

  • plot_summary() (in module cell_cycle_gating.ph3_filter)

© Copyright 2018, Kartik Subramanian, Marc Hafner Revision f5730795.

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